Package index
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applyLayoutDaylight() - applyLayoutDaylight
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as.evonet(<treedata>) - Treedata object to evonet
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as.treedata(<evonet>) - Evonet object to treedata
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fortify(<evonet>) - Fortify evonet objects
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fortify(<treedata>) - Transforms treedata objects into data frames that can be passed to ggplot2
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geom_ret() - Explicit phylogenetic network
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geom_segment2() - geom_segment2
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get.path() - get.path
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getNodeAngle.df() - getNodeAngle.df
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getNodesBreadthFirst.df() - getNodesBreadthFirst.df
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getSubtree() - getSubtree
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getSubtree.df() - getSubtree.df
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getSubtreeUnrooted() - getSubtreeUnrooted
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getSubtreeUnrooted.df() - getSubtreeUnrooted
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getTreeArcAngles() - getTreeArcAngles
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ggret() - Plot reticulation networks
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group_clade() - Group clades
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layoutDaylight() - Equal daylight layout method for unrooted trees.
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modify_ret() - Change reticulation coloring
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read_beast_retnet() - read beast files that contain phylogenetic networks
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read_enewick() - Read Network in Extended Newick Format
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retnet_evonet - An example reticulation network in evonet format
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retnet_treedata - An example reticulation network in treedata format
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rotateTreePoints.df() - rotateTreePoints.data.frame