A small reticulation network for testing purposes with additional metadata
Format
retnet_treedata
Evolutionary network with 4 reticulations, the base tree has 20 tips and 27 internal nodes:
- edge
Edge matrix that describes the base tree toplogy
- edge.length
Edge lengths
- Nnode
Number of internal nodes
- node.label
Labels for internal nodes.
- tip.label
Labels for network tips. (taxon_1-taxon_20)
- root.edge
edge identifier of root
- reticulation
Edge matrix for reticulations
- ret.length
Reticulation Lengths
- isTip
Boolean, defines whether node is tip or not
- posterior
Posterior probality for node position
- height_95_HPD
Range of the 95% HPD
- conv
Reticulation edge index
- region
Position of the affected parts of the genome
- locus
Locus name
- relSize
Relative size
- startSite_95_HPD
95% HPD of the reticulation start site
- endSite_95_HPD
95% HPD of the reticulation end site
...