Plot reticulation networks
Usage
ggret(
data,
mapping = NULL,
retcol = "black",
arrows = FALSE,
retlinetype = 2,
rettype = "snake",
na.rm = TRUE,
mrsd = NULL,
as.Date = FALSE,
yscale = "none",
yscale_mapping = NULL,
ladderize = TRUE,
right = FALSE,
branch.length = "branch.length",
root.position = 0,
xlim = NULL,
layout.params = list(as.graph = TRUE),
hang = 0.1,
...
)Arguments
- data
either treedata or evonet objects
- mapping
aesthetic mappings
- retcol
reticulation edge colour
- arrows
if TRUE reticulation edges end with arrows
- retlinetype
line type aesthetic for reticulations
- rettype
Either 'straight' or 'snake'. Determines in which style reticulations are drawn
- na.rm
supresses NA value warnings
- mrsd
Most recent sampling date
- as.Date
logical whether using Date class for time
- yscale
Y-Scale
- yscale_mapping
Y-scale mapping for category variable,
- ladderize
Logical (default TRUE). Should the tree be re-organized to have a 'ladder' format?
- right
Logical. If ladderize = TRUE, should the ladder have the smallest clade on the right-hand side? See ape::ladderize() for more information.
- branch.length
Variable for scaling branch.
- root.position
Position of the root node (default = 0)
- xlim
X-Axis limits.
- layout.params
Layout parameters in list format
- hang
Defines the hang
- ...
additional parameter