Transforms treedata objects into data frames that can be passed to ggplot2

Usage

# S3 method for class 'treedata'
fortify(
  model,
  data,
  layout = "rectangular",
  ladderize = TRUE,
  right = FALSE,
  branch.length = "branch.length",
  mrsd = NULL,
  as.Date = FALSE,
  yscale = "none",
  root.position = 0,
  ...
)

Arguments

model: treedata object to convert to data frame
data: original data
layout: Currently only 'rectangular' layout is supported
ladderize: if TRUE it reorganizes the backbone tree into a ladder-like structure
right: specifies whether the smallest clade should be on the right or left
branch.length: specifies branch length attribute
mrsd: specifies mrsd attribute
as.Date: specifies as.Date attribute
yscale: specifies y scale attribute
root.position: specifies root attribute
...: other arguments passed to methods

Value

fortified data frame